The new genus is one of 31 microbial members found living inside two separate fracturing wells, DCO's Kelly Wrighton and colleagues report in the journal Nature Microbiology.
Even though the wells were hundreds of miles apart and drilled in different kinds of shale formations, the microbial communities inside them were nearly identical. Many of the species the researchers found probably came from the surface ponds that energy companies draw on to fill the wells. But that’s not the case with the newly identified Candidatus Frackibacter.
In biological nomenclature, “Candidatus” indicates that a new organism is being studied for the first time using a genomic approach, not an isolated organism in a lab culture. The researchers chose to name the genus “Frackibacter” as a play on the word “fracking,” shorthand for “hydraulic fracturing.”
“We think that the microbes in each well may form a self-sustaining ecosystem where they provide their own food sources,” said Wrighton (The Ohio State University, USA). “Drilling the well and pumping in fracturing fluid creates the ecosystem, but the microbes adapt to their new environment in a way to sustain the system over long periods.”
By sampling fluids taken from the two wells over 328 days, the researchers reconstructed the genomes of bacteria and archaea living in the shale. To the researchers’ surprise, both wells—one drilled in Utica shale and the other drilled in Marcellus shale—developed nearly identical microbial communities.
In addition, the two wells are each owned by different energy companies that utilize different fracturing techniques. The two types of shale exist more than a mile and a half below ground, formed millions of years apart, and contain different forms of fossil fuel. Yet one bacterium, Halanaerobium, emerged to dominate communities in both wells.
“We thought we might get some of the same types of bacteria, but the level of similarity was so high it was striking. That suggests that whatever’s happening in these ecosystems is more influenced by the fracturing than the inherent differences in the shale,” Wrighton said.
Wrighton and her team are still not 100 percent sure of the microbes’ origins. Some almost undoubtedly came from the ponds that provide water to the wells, she said. But other bacteria and archaea could have been living in the rock before drilling began, Candidatus Frackibacter among them.
Shale energy companies typically formulate their own proprietary recipes for the fluid they pump into wells to break up the rock and release oil or gas, explained Rebecca Daly (The Ohio State University, USA), lead author of the Nature Microbiology paper. They all start with water and add other chemicals. Once the fluid is inside a well, salt within the shale leaches into it, making it briny.
The microorganisms living in the shale must tolerate high temperature, pressure, and salinity, but this study suggests that salinity is likely the most important stressor on the microbes’ survival. Salinity forces the microbes to synthesize organic compounds called osmoprotectants to prevent them from bursting. When cells die, the osmoprotectants are released and other microbes can use them for protection or eat them as food. In this way, salinity forced the microbes to generate a sustainable food source.
In addition to physical constraints in the environment, the microbes also must protect themselves from viruses. The researchers reconstructed the genomes of viruses living inside the wells, and found genetic evidence that some bacteria were indeed falling prey to viruses, dying, and releasing osmoprotectants into the water.
By examining the genomes of the different microbes, the researchers found that both Halanaerobium and Candidatus Frackibacter rely on osmoprotectants. In turn, these bacteria provided food for other microbes called methanogens, which produce methane.
To validate their findings from the field, the researchers grew the same microbes in the lab under similar conditions. The lab-grown microbes also produced osmoprotectants that were converted into methane—a confirmation that the researchers are on the right track to understanding what’s happening inside the wells.
One implication of the study is that methane produced by microbes living in shale wells could possibly supplement the wells’ energy output.
Wrighton and Daly described the amount of methane produced by the microbes as likely minuscule compared to the amount of oil and gas harvested from the shale even a year after initial fracturing. But, they point out, there is a precedent in a related industry, that of coal-bed methane, to use microbes to greater advantage.
“In coal-bed systems they’ve shown that they can facilitate microbial life and increase methane yields,” Wrighton said. “As the system shifts over time to being less productive, the contribution of biogenic methane could become significantly higher in shale wells. We haven’t gotten to that point yet, but it’s a possibility.”
In the meantime, research led by co-author Michael Wilkins (The Ohio State University, USA) used genomics information to grow Candidatus Frackibacter in the lab and is further testing its ability to handle high pressure and salinity.
Among the study’s co-authors are DCO scientists Paula Mouser and David Cole (The Ohio State University, USA).
This work is funded by the National Science Foundation’s Dimensions of Biodiversity program, the Department of Energy and the Deep Carbon Observatory.
Photos: Top: These jars contain samples of "produced water fluids" -- the fluid that is collected at the surface of a hydraulic fracturing well after fracturing -- from wells in Marcellus and Utica shale formations. The fluids are orange because they contain large amounts of iron that oxidizes when the fluids are brought to the surface. By analyzing the genomes of microbes in the water, the researchers are piecing together the existence of microbial communities inside the wells. Photo by Rebecca Daly, courtesy of The Ohio State University. Middle: Epifluorescence microscope image of Halanaerobium bacteria cells -- one of the bacteria species which Ohio State researchers and their partners have discovered thriving in hydraulic fracturing wells. Image by Michael Wilkins, courtesy of The Ohio State University.
Article adapted from source.